Joint Genome Institute
Center for Integrative Genomics
Keyword search
BLAST search
Gene Symbol, Identifier, Defline and Ontology Search
Search node:
All nodes
Search for:
add trailing wildcard
Search in:
Everything
Symbols/Identifiers/Deflines
Ontologies:
Pfam
Panther
KOG
EC
GO
KEGG Orthology
Cluster KEGG Orthology
BLAST search:
Query Name (optional):
Query Sequence:
BLAST target type:
Node consensus
Organism genome
BLAST program:
BLASTP - protein query to protein db
BLASTX - translated (6 frames) nucl. query to protein db
Target node:
BLAST program:
BLASTN - nucleotide query to nucleotide db
TBLASTX - transl. (6 frames) nucl. query to transl (6) nt db
TBLASTN - protein query to translated (6 frames) nt db
Target genome:
Hydra
optional parameters
:
Output format :
gapped alignments
nongapped alignments
Comparison Matrix :
BLOSUM62
BLOSUM45
PAM30
PAM70
Word Length (W value) :
default
15
14
13
12
11
10
9
8
7
6
5
4
3
2
Default = 11 for BLASTN, 3 for all others
Expect threshold (E threshold):
Number of alignments to show :
0
25
50
100
200
400
800
1000
Filter options :
On
Off
Include singletons :
Yes
No
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